WheatOmics: a platform combining multiple omics data to accelerate
functional genomics studies in wheat.

News

  • July. 31, 2021   Rye Lo7 genome and it's genes and proteins were added to BLAST, GetSequence and JBrowse.

  • July. 17, 2021   Fielder genome and it's genes and proteins were added to BLAST, GetSequence and JBrowse.

  • May. 28, 2021  Many ChIP_seq data (H3K9ac, H3K4me3, H3K27me3) were added to Chinese Spring JBrowse.

  • May. 28, 2021   Four Aegilops tauschii genomes (AY17, AY61, T093, XJ02) and their's genes and proteins were added.

  • May. 11, 2021   New genome (IWGSC RefSeqv2.1 genome and its annotation) was addded.

    Tools in this website:

GetSequence

Querying by Gene ID or Genomic Interval

BLAST

Sequence Similarity Search

PfamSearch

Querying by Pfam ID


PrimerServer

Primer Design

IDConverter

Gene ID Converter

HomologFinder

Querying by Gene ID


GeneExpression

Querying by Gene ID

Co-expression

Co-expression Analysis

WheatPPI

Protein Interactions Search


KnownGene

Wheat Known Genes Search

SyntenySearch

Querying Gene Synteny

IntervalTool

Gene information for a genome interval


    Data in JBrowse:

Annotated Genomic Features

Genes, TEs, lncRNAs, SSRs etc.

Transcriptional Level Data

PacBio, RNA-seq, EST, cDNA etc.

Marker Information

SSRs, DArTs, SNPs (90K, 280K, 660K, 820K) etc.


Population Variants

GBS, Exome, WGS etc.
(SNPs & InDels)

Epigenomics and 3D Genomics

sRNAs, DNA methylation, Histone modfication, 3D chromatin.

EMS Mutants

Jimai22, Cadenza, Kronos


TF Motifs

TF Binding Sites

Gene Editing

CRISPR/Cas9 sgRNAs

Small RNAs

miRNAs, siRNAs, phasiRNAs etc.