WheatOmics: a platform combining multiple omics data to accelerate
functional genomics studies in wheat.

If use WheatOmics in pulication, please cite:
Shengwei Ma, Meng Wang, Jianhui Wu, Weilong Guo, Yongming Chen, Guangwei Li, Yanpeng Wang, Weiming Shi, Guangmin Xia, Daolin Fu, Zhensheng Kang, Fei Ni. (2021) WheatOmics: a platform combining multiple omics data to accelerate functional genomics studies in wheat. Mol Plant 14:1965-1968.
News
  • July 23, 2022   Kenong9204 genome were added to BLAST, GetSequence and JBrowse. More details please to see the paper on the Molecular Plant.

  • May 26, 2022Am. muticum draft genome were added to BLAST and GetSequence. More details please to see the paper on the Plant Biotechnology Journal.

  • May 20, 2022   wheat cv. Attraktion genome were added to BLAST, GetSequence and JBrowse. More details please to see the paper on the Plant Biotechnology Journal.

  • May 1, 2022   wheat cv. Renan genome and it's genes and proteins were added to BLAST, GetSequence and JBrowse.More details please to see the paper on the GigaScience.

  • March 16, 2022   wheat cv. Kariega genome and it's genes and proteins were added to BLAST, GetSequence and JBrowse. More details please to see the paper on the Nat Genet.

  • 18 February, 2022   Li et al. exome sequenced 287 wheat accessions that were collected in the past 100 years. We mapped these data to the genome of Chinese Spring v2.1 and you can access variant resources including 10,672,823 SNPs and 842369 InDels from JBrowse for Chinese Spring v2.1. More details please to see the paper on Mol Plant.

  • 13 January, 2022   Five genomes including Ae. bicornis, Ae. longissima, Ae. searsii, Ae. sharonensis, and Ae. speltoides and their genes and proteins were added to BLAST, PrimerServer, GetSequence and JBrowse. More details please to see the paper on Mol Plant.

  • 13 January, 2022   Three genomes including Aegilops speltoides, Aegilops longissima and Aegilops sharonensis and their genes and proteins were added to BLAST, PrimerServer, GetSequence and JBrowse. More details please to see the paper on the plant journal.

  • 13 September, 2021   The reference-quality genome sequence Aet v5.0 for Ae. tauschii acc. AL8/78 was added to BLAST, GetSequence and PrimerServer. More details please to see the paper on G3 Genes|Genomes|Genetics.

  • 27 October, 2021   Our paper about this website was published in Molecular Plant! DOI:10.1016/j.molp.2021.10.006

  • 31 July , 2021   Rye Lo7 genome and it's genes and proteins were added to BLAST, GetSequence and JBrowse.

  • 17 July, 2021   Fielder genome and it's genes and proteins were added to BLAST, GetSequence and JBrowse.

  • 28 May, 2021  Many ChIP_seq data (H3K9ac, H3K4me3, H3K27me3) were added to Chinese Spring JBrowse.

  • 28 May, 2021   Four Aegilops tauschii genomes (AY17, AY61, T093, XJ02) and their's genes and proteins were added.

  • 11 May, 2021   New genome (IWGSC RefSeqv2.1 genome and its annotation) was addded.


    Tools in this website:

GetSequence

Querying by Gene ID or Genomic Interval

BLAST

Sequence Similarity Search

PfamSearch

Querying by Pfam ID


PrimerServer

Primer Design

IDConverter

Gene ID Converter

HomologFinder

Querying by Gene ID


GeneExpression

Querying by Gene ID

Co-expression

Co-expression Analysis

WheatPPI

Protein Interactions Search


KnownGene

Wheat Known Genes Search

SyntenySearch

Querying Gene Synteny

IntervalTool

Gene information for a genome interval


    Data in JBrowse:

Annotated Genomic Features

Genes, TEs, lncRNAs, SSRs etc.

Transcriptional Level Data

PacBio, RNA-seq, EST, cDNA etc.

Marker Information

SSRs, DArTs, SNPs (90K, 280K, 660K, 820K) etc.


Population Variants

GBS, Exome, WGS etc.
(SNPs & InDels)

Epigenomics and 3D Genomics

sRNAs, DNA methylation, Histone modfication, 3D chromatin.

EMS Mutants

Jimai22, Cadenza, Kronos


TF Motifs

TF Binding Sites

Gene Editing

CRISPR/Cas9 sgRNAs

Small RNAs

miRNAs, siRNAs, phasiRNAs etc.