WheatOmics: a platform combining multiple omics data to accelerate
functional genomics studies in wheat.

News

  • July. 31, 2021   Rye Lo7 genome and it's genes and proteins were added to BLAST,GetSequences and JBrowse.

  • July. 17, 2021   Fielder genome and it's genes and proteins were added to BLAST,GetSequences and JBrowse.

  • May. 28, 2021  Many ChIP_seq data (H3K9ac, H3K4me3, H3K27me3) were added to Chinese Spring JBrowse.

  • May. 28, 2021   Four Aegilops tauschii genomes (AY17, AY61, T093, XJ02) and their's genes and proteins were added.

  • May. 11, 2021   New genome (IWGSC RefSeqv2.1 genome and its annotation) was addded.

    Tools in this website:

GetSequences

Get by Gene ID or Genomic Interval

BLAST

Sequence Similarity Search

preBLAST

Protein BLAST Result Search


PrimerServer

Design Primer

IDConverter

Gene ID Convert

HomologFinder

Search by Gene ID


GeneExpression

Get by Gene ID

Co-expression

Co-expression Analysis

wheatPPI

Protein Interactions Search


KnownGenes

Search Known Genes

SyntenySearch

Query Gene Synteny

SequenceToolkit

Search Known Genes

IntervalTools

Gene information for a genome interval


    Data in JBrowse:


Annotated Genomic Features

Gene, TE, lncRNA, SSR etc.

Transcriptional Level Data

PacBio, RNA-seq, EST, cDNA etc.

Marker Information

SSR, DArT, SNP (90k,280k,660k,820k) etc.


Population Variants

GBS, Exome, WGS etc.
(SNP & InDel)

Epigenomics and 3D Genomics

sRNA, DNA methylation, Histone modfication, 3D chromatin.

EMS Mutants

Jimai22, Cadenza, Kronos


TF Motifs

TF Binding Sites

Gene Editing

Cas9 sgRNAs

Small RNAs

miRNA, siRNA, phasiRNA etc.